Creator:

Kozarzewski Bohdan

Tags:

sequence parsing, similarity measure, phylogenetic tree

Abstract:

Symbolic sequence decomposition into a set of consecutive, distinct subsequences (mers) is presented. Several statistical distributions of nucleotide subsequences are defined and analysed. Sequence entropy and similarity between sequences in terms of mer lengths distribution are defined. An alignment-free method of phylogenetic tree construction is proposed.

Place of publishing:

Poznań

Publisher:

OWN

Date accepted:

2012.06.07

Date submitted:

2012.02.22

Date issued:

2012.06.21

Resource Type:

artykuł

Format:

application/pdf

Resource Identifier:

10.12921/cmst.2012.18.01.5-10

Language:

eng